IL_6ZM7_124

3D structure

PDB id

6ZM7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-EBP1 ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

6ZM7|1|L5|A|3785, 6ZM7|1|L5|C|3791, 6ZM7|1|L5|C|3810

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZM7_124 not in the Motif Atlas

Homologous match to IL_5TBW_090

Geometric discrepancy: 0.075

The information below is about IL_5TBW_090

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

6ZM7|1|L5|C|3781
6ZM7|1|L5|C|3782
6ZM7|1|L5|A|3783
6ZM7|1|L5|A|3784
6ZM7|1|L5|A|3785
6ZM7|1|L5|U|3786
6ZM7|1|L5|G|3787
6ZM7|1|L5|C|3788
6ZM7|1|L5|C|3789
6ZM7|1|L5|U|3790
6ZM7|1|L5|C|3791
6ZM7|1|L5|G|3792
*
6ZM7|1|L5|C|3808
6ZM7|1|L5|G|3809
6ZM7|1|L5|C|3810
6ZM7|1|L5|G|3811

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain Ln

60S ribosomal protein L41

Chain S2

Small subunit ribosomal RNA; SSU rRNA