IL_6ZM7_140

3D structure

PDB id

6ZM7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-EBP1 ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GUG*UUUUU

Length

8 nucleotides

Bulged bases

6ZM7|1|L5|U|4437

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZM7_140 not in the Motif Atlas

Homologous match to IL_5TBW_105

Geometric discrepancy: 0.09

The information below is about IL_5TBW_105

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

6ZM7|1|L5|G|4405
6ZM7|1|L5|U|4406
6ZM7|1|L5|G|4407
*
6ZM7|1|L5|U|4435
6ZM7|1|L5|U|4436
6ZM7|1|L5|U|4437
6ZM7|1|L5|U|4438
6ZM7|1|L5|U|4439

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LI

60S ribosomal protein L10-like