IL_6ZM7_143

3D structure

PDB id

6ZM7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-EBP1 ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUC*GUGAG

Length

8 nucleotides

Bulged bases

6ZM7|1|L5|G|4522, 6ZM7|1|L5|A|4523

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZM7_143 not in the Motif Atlas

Geometric match to IL_5TBW_108

Geometric discrepancy: 0.0821

The information below is about IL_5TBW_108

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_54650.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

6ZM7|1|L5|C|4456
6ZM7|1|L5|U|4457
6ZM7|1|L5|C|4458
*
6ZM7|1|L5|G|4520
6ZM7|1|L5|U|4521
6ZM7|1|L5|G|4522
6ZM7|1|L5|A|4523
6ZM7|1|L5|G|4524

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LV

60S ribosomal protein L23