IL_6ZM7_150

3D structure

PDB id

6ZM7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-EBP1 ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CCAU*AGGCG

Length

9 nucleotides

Bulged bases

6ZM7|1|L5|C|4720

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZM7_150 not in the Motif Atlas

Geometric match to IL_4WF9_054

Geometric discrepancy: 0.3629

The information below is about IL_4WF9_054

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_74317.1

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

6ZM7|1|L5|C|4582
6ZM7|1|L5|C|4583
6ZM7|1|L5|A|4584
6ZM7|1|L5|U|4585
*
6ZM7|1|L5|A|4717
6ZM7|1|L5|G|4718
6ZM7|1|L5|G|4719
6ZM7|1|L5|C|4720
6ZM7|1|L5|G|4721

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LO

60S ribosomal protein L13a