IL_6ZM7_225
3D structure
- PDB id
- 6ZM7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-EBP1 ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- AC*GAAU
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZM7_225 not in the Motif Atlas
- Homologous match to IL_4V88_423
- Geometric discrepancy: 0.1298
- The information below is about IL_4V88_423
- Detailed Annotation
- Major groove minor groove platform; mini C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_68140.1
- Basepair signature
- cWW-cSH-cWW
- Number of instances in this motif group
- 19
Unit IDs
6ZM7|1|S2|A|802
6ZM7|1|S2|C|803
*
6ZM7|1|S2|G|860
6ZM7|1|S2|A|861
6ZM7|1|S2|A|862
6ZM7|1|S2|U|863
Current chains
- Chain S2
- 18S ribosomal RNA
Nearby chains
- Chain SH
- 40S ribosomal protein S7
- Chain SL
- 40S ribosomal protein S11
- Chain SW
- 40S ribosomal protein S15a
- Chain SX
- 40S ribosomal protein S23
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