IL_6ZM7_260

3D structure

PDB id

6ZM7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-EBP1 ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UA*UCCCCCA

Length

9 nucleotides

Bulged bases

6ZM7|1|S2|C|1433, 6ZM7|1|S2|C|1434

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZM7_260 not in the Motif Atlas

Geometric match to IL_1R3E_002

Geometric discrepancy: 0.232

The information below is about IL_1R3E_002

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_05670.1

Basepair signature

cWW-cWW

Number of instances in this motif group

9

Unit IDs

6ZM7|1|S2|U|1408
6ZM7|1|S2|A|1409
*
6ZM7|1|S2|U|1432
6ZM7|1|S2|C|1433
6ZM7|1|S2|C|1434
6ZM7|1|S2|C|1435
6ZM7|1|S2|C|1436
6ZM7|1|S2|C|1437
6ZM7|1|S2|A|1438

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SQ

40S ribosomal protein S16

Chain SU

40S ribosomal protein S20