IL_6ZME_025

3D structure

PDB id

6ZME (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-eERF1 ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGUC*GC

Length

6 nucleotides

Bulged bases

6ZME|1|L5|G|483, 6ZME|1|L5|U|484

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZME_025 not in the Motif Atlas

Geometric match to IL_4LFB_007

Geometric discrepancy: 0.2293

The information below is about IL_4LFB_007

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_75289.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

6ZME|1|L5|G|482
6ZME|1|L5|G|483
6ZME|1|L5|U|484
6ZME|1|L5|C|485
*
6ZME|1|L5|G|671
6ZME|1|L5|C|672

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain Lr

60S ribosomal protein L28