IL_6ZME_030

3D structure

PDB id

6ZME (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-eERF1 ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGCCCGG*UCC

Length

10 nucleotides

Bulged bases

6ZME|1|L5|C|501, 6ZME|1|L5|C|502, 6ZME|1|L5|C|503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZME_030 not in the Motif Atlas

Geometric match to IL_3TD0_002

Geometric discrepancy: 0.3178

The information below is about IL_3TD0_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

6ZME|1|L5|G|499
6ZME|1|L5|G|500
6ZME|1|L5|C|501
6ZME|1|L5|C|502
6ZME|1|L5|C|503
6ZME|1|L5|G|504
6ZME|1|L5|G|505
*
6ZME|1|L5|U|653
6ZME|1|L5|C|654
6ZME|1|L5|C|655

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LQ

60S ribosomal protein L18