IL_6ZME_046
3D structure
- PDB id
- 6ZME (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-eERF1 ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GAC*GGU
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZME_046 not in the Motif Atlas
- Geometric match to IL_4WF9_083
- Geometric discrepancy: 0.1747
- The information below is about IL_4WF9_083
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_01003.1
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 174
Unit IDs
6ZME|1|L5|G|1094
6ZME|1|L5|A|1095
6ZME|1|L5|C|1096
*
6ZME|1|L5|G|1199
6ZME|1|L5|G|1200
6ZME|1|L5|U|1201
Current chains
- Chain L5
- 28S ribosomal RNA
Nearby chains
- Chain LS
- 60S ribosomal protein L18a
- Chain LT
- 60S ribosomal protein L21
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