IL_6ZME_053
3D structure
- PDB id
- 6ZME (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-eERF1 ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GGAUC*GCGCAC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZME_053 not in the Motif Atlas
- Geometric match to IL_4V9F_018
- Geometric discrepancy: 0.2817
- The information below is about IL_4V9F_018
- Detailed Annotation
- Triple sheared related
- Broad Annotation
- Triple sheared
- Motif group
- IL_67427.1
- Basepair signature
- cWW-cWW-L-R-L-R-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
6ZME|1|L5|G|1425
6ZME|1|L5|G|1426
6ZME|1|L5|A|1427
6ZME|1|L5|U|1428
6ZME|1|L5|C|1429
*
6ZME|1|L5|G|1455
6ZME|1|L5|C|1456
6ZME|1|L5|G|1457
6ZME|1|L5|C|1458
6ZME|1|L5|A|1459
6ZME|1|L5|C|1460
Current chains
- Chain L5
- 28S ribosomal RNA
Nearby chains
- Chain LQ
- 60S ribosomal protein L18
- Chain Lb
- 60S ribosomal protein L29
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