IL_6ZME_083

3D structure

PDB id

6ZME (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-eERF1 ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GACCCCAGAAAA*UGAAAAUGGAUGGCGC

Length

28 nucleotides

Bulged bases

6ZME|1|L5|C|1935, 6ZME|1|L5|A|2041

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZME_083 not in the Motif Atlas

Geometric match to IL_5TBW_052

Geometric discrepancy: 0.2181

The information below is about IL_5TBW_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_53762.1

Basepair signature

cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

6ZME|1|L5|G|1933
6ZME|1|L5|A|1934
6ZME|1|L5|C|1935
6ZME|1|L5|C|1936
6ZME|1|L5|C|1937
6ZME|1|L5|C|1938
6ZME|1|L5|A|1939
6ZME|1|L5|G|1940
6ZME|1|L5|A|1941
6ZME|1|L5|A|1942
6ZME|1|L5|A|1943
6ZME|1|L5|A|1944
*
6ZME|1|L5|U|2038
6ZME|1|L5|G|2039
6ZME|1|L5|A|2040
6ZME|1|L5|A|2041
6ZME|1|L5|A|2042
6ZME|1|L5|A|2043
6ZME|1|L5|U|2044
6ZME|1|L5|G|2045
6ZME|1|L5|G|2046
6ZME|1|L5|A|2047
6ZME|1|L5|U|2048
6ZME|1|L5|G|2049
6ZME|1|L5|G|2050
6ZME|1|L5|C|2051
6ZME|1|L5|G|2052
6ZME|1|L5|C|2053

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain L7

5S ribosomal RNA; 5S rRNA

Chain LB

60S ribosomal protein L3

Chain LI

60S ribosomal protein L10-like

Chain LO

60S ribosomal protein L13a

Chain Lf

60S ribosomal protein L35a

Chain Lm

Ubiquitin-60S ribosomal protein L40