IL_6ZME_124

3D structure

PDB id

6ZME (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-eERF1 ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

6ZME|1|L5|A|3785, 6ZME|1|L5|C|3791, 6ZME|1|L5|C|3810

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZME_124 not in the Motif Atlas

Homologous match to IL_8C3A_095

Geometric discrepancy: 0.0931

The information below is about IL_8C3A_095

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

6ZME|1|L5|C|3781
6ZME|1|L5|C|3782
6ZME|1|L5|A|3783
6ZME|1|L5|A|3784
6ZME|1|L5|A|3785
6ZME|1|L5|U|3786
6ZME|1|L5|G|3787
6ZME|1|L5|C|3788
6ZME|1|L5|C|3789
6ZME|1|L5|U|3790
6ZME|1|L5|C|3791
6ZME|1|L5|G|3792
*
6ZME|1|L5|C|3808
6ZME|1|L5|G|3809
6ZME|1|L5|C|3810
6ZME|1|L5|G|3811

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain CH

Eukaryotic peptide chain release factor subunit 1

Chain Ln

60S ribosomal protein L41

Chain S2

Small subunit ribosomal RNA; SSU rRNA