IL_6ZME_178

3D structure

PDB id

6ZME (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-eERF1 ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AUCUC*GAUCU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZME_178 not in the Motif Atlas

Homologous match to IL_7RQB_114

Geometric discrepancy: 0.1605

The information below is about IL_7RQB_114

Detailed Annotation

Symmetric double minor groove platform

Broad Annotation

No text annotation

Motif group

IL_58103.6

Basepair signature

cWW-cWS-L-tSW-L-cWW

Number of instances in this motif group

8

Unit IDs

6ZME|1|L7|A|32
6ZME|1|L7|U|33
6ZME|1|L7|C|34
6ZME|1|L7|U|35
6ZME|1|L7|C|36
*
6ZME|1|L7|G|41
6ZME|1|L7|A|42
6ZME|1|L7|U|43
6ZME|1|L7|C|44
6ZME|1|L7|U|45

Current chains

Chain L7

5S ribosomal RNA

Nearby chains

Chain L5

Large subunit ribosomal RNA; LSU rRNA

Chain LD

60S ribosomal protein L5

Chain LJ

60S ribosomal protein L11