IL_6ZME_215
3D structure
- PDB id
- 6ZME (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-eERF1 ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GAC*GGC
- Length
- 6 nucleotides
- Bulged bases
- 6ZME|1|S2|A|536
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZME_215 not in the Motif Atlas
- Geometric match to IL_5WLH_001
- Geometric discrepancy: 0.1747
- The information below is about IL_5WLH_001
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_82107.5
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 31
Unit IDs
6ZME|1|S2|G|535
6ZME|1|S2|A|536
6ZME|1|S2|C|537
*
6ZME|1|S2|G|546
6ZME|1|S2|G|547
6ZME|1|S2|C|548
Current chains
- Chain S2
- 18S ribosomal RNA
Nearby chains
- Chain Se
- 40S ribosomal protein S30
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