IL_6ZME_215

3D structure

PDB id

6ZME (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-eERF1 ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAC*GGC

Length

6 nucleotides

Bulged bases

6ZME|1|S2|A|536

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZME_215 not in the Motif Atlas

Geometric match to IL_5WLH_001

Geometric discrepancy: 0.1747

The information below is about IL_5WLH_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_71421.2

Basepair signature

cWW-cWW

Number of instances in this motif group

35

Unit IDs

6ZME|1|S2|G|535
6ZME|1|S2|A|536
6ZME|1|S2|C|537
*
6ZME|1|S2|G|546
6ZME|1|S2|G|547
6ZME|1|S2|C|548

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain Se

40S ribosomal protein S30