3D structure

PDB id
6ZME (explore in PDB, NAKB, or RNA 3D Hub)
Description
SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-eERF1 ribosome complex
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
GAC*GGC
Length
6 nucleotides
Bulged bases
6ZME|1|S2|A|536
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6ZME_215 not in the Motif Atlas
Geometric match to IL_5WLH_001
Geometric discrepancy: 0.1747
The information below is about IL_5WLH_001
Detailed Annotation
Multiple bulged bases
Broad Annotation
No text annotation
Motif group
IL_82107.5
Basepair signature
cWW-cWW
Number of instances in this motif group
31

Unit IDs

6ZME|1|S2|G|535
6ZME|1|S2|A|536
6ZME|1|S2|C|537
*
6ZME|1|S2|G|546
6ZME|1|S2|G|547
6ZME|1|S2|C|548

Current chains

Chain S2
18S ribosomal RNA

Nearby chains

Chain Se
40S ribosomal protein S30

Coloring options:


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