IL_6ZME_264

3D structure

PDB id

6ZME (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-eERF1 ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

6ZME|1|S2|C|1701, 6ZME|1|S2|A|1835

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZME_264 not in the Motif Atlas

Geometric match to IL_5J7L_058

Geometric discrepancy: 0.1164

The information below is about IL_5J7L_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

6ZME|1|S2|C|1700
6ZME|1|S2|C|1701
6ZME|1|S2|G|1702
*
6ZME|1|S2|C|1833
6ZME|1|S2|A|1834
6ZME|1|S2|A|1835
6ZME|1|S2|G|1836

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain CE

Coiled-coil domain-containing protein 124

Chain Sa

40S ribosomal protein S26