IL_6ZME_269

3D structure

PDB id

6ZME (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-eERF1 ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGAU*AGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZME_269 not in the Motif Atlas

Homologous match to IL_4V88_468

Geometric discrepancy: 0.0847

The information below is about IL_4V88_468

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

6ZME|1|S2|C|1717
6ZME|1|S2|G|1718
6ZME|1|S2|A|1719
6ZME|1|S2|U|1720
*
6ZME|1|S2|A|1813
6ZME|1|S2|G|1814
6ZME|1|S2|A|1815
6ZME|1|S2|G|1816

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain L5

Large subunit ribosomal RNA; LSU rRNA

Chain LV

60S ribosomal protein L23

Chain Ln

60S ribosomal protein L41