IL_6ZME_274

3D structure

PDB id

6ZME (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-eERF1 ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGGAU*AGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZME_274 not in the Motif Atlas

Homologous match to IL_4V88_474

Geometric discrepancy: 0.2011

The information below is about IL_4V88_474

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

6ZME|1|S2|C|1742
6ZME|1|S2|G|1743
6ZME|1|S2|G|1744
6ZME|1|S2|A|1745
6ZME|1|S2|U|1746
*
6ZME|1|S2|A|1788
6ZME|1|S2|G|1789
6ZME|1|S2|A|1790
6ZME|1|S2|A|1791
6ZME|1|S2|G|1792

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain LW

60S ribosomal protein L24

Chain SG

40S ribosomal protein S6

Chain SI

40S ribosomal protein S8