3D structure

PDB id
6ZMI (explore in PDB, NAKB, or RNA 3D Hub)
Description
SARS-CoV-2 Nsp1 bound to the human LYAR-80S ribosome complex
Experimental method
ELECTRON MICROSCOPY
Resolution
2.6 Å

Loop

Sequence
GACCCCAGAAAA*UGAAAAUGGAUGGCGC
Length
28 nucleotides
Bulged bases
6ZMI|1|L5|C|1935, 6ZMI|1|L5|A|2041
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6ZMI_084 not in the Motif Atlas
Geometric match to IL_5TBW_052
Geometric discrepancy: 0.1619
The information below is about IL_5TBW_052
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_53762.1
Basepair signature
cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW-L
Number of instances in this motif group
2

Unit IDs

6ZMI|1|L5|G|1933
6ZMI|1|L5|A|1934
6ZMI|1|L5|C|1935
6ZMI|1|L5|C|1936
6ZMI|1|L5|C|1937
6ZMI|1|L5|C|1938
6ZMI|1|L5|A|1939
6ZMI|1|L5|G|1940
6ZMI|1|L5|A|1941
6ZMI|1|L5|A|1942
6ZMI|1|L5|A|1943
6ZMI|1|L5|A|1944
*
6ZMI|1|L5|U|2038
6ZMI|1|L5|G|2039
6ZMI|1|L5|A|2040
6ZMI|1|L5|A|2041
6ZMI|1|L5|A|2042
6ZMI|1|L5|A|2043
6ZMI|1|L5|U|2044
6ZMI|1|L5|G|2045
6ZMI|1|L5|G|2046
6ZMI|1|L5|A|2047
6ZMI|1|L5|U|2048
6ZMI|1|L5|G|2049
6ZMI|1|L5|G|2050
6ZMI|1|L5|C|2051
6ZMI|1|L5|G|2052
6ZMI|1|L5|C|2053

Current chains

Chain L5
28S ribosomal RNA

Nearby chains

Chain L7
5S ribosomal RNA; 5S rRNA
Chain LB
60S ribosomal protein L3
Chain LI
60S ribosomal protein L10-like
Chain LO
60S ribosomal protein L13a
Chain Lf
60S ribosomal protein L35a
Chain Lm
Ubiquitin-60S ribosomal protein L40

Coloring options:


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