IL_6ZMI_089

3D structure

PDB id

6ZMI (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human LYAR-80S ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

6ZMI|1|L5|A|2002

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZMI_089 not in the Motif Atlas

Geometric match to IL_1MMS_002

Geometric discrepancy: 0.1857

The information below is about IL_1MMS_002

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_51387.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

21

Unit IDs

6ZMI|1|L5|G|2001
6ZMI|1|L5|A|2002
6ZMI|1|L5|G|2003
6ZMI|1|L5|U|2004
6ZMI|1|L5|G|2005
*
6ZMI|1|L5|C|2014
6ZMI|1|L5|U|2015
6ZMI|1|L5|C|2016

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain Ls

60S acidic ribosomal protein P0

Chain Lt

60S ribosomal protein L12