3D structure

PDB id
6ZMI (explore in PDB, NAKB, or RNA 3D Hub)
Description
SARS-CoV-2 Nsp1 bound to the human LYAR-80S ribosome complex
Experimental method
ELECTRON MICROSCOPY
Resolution
2.6 Å

Loop

Sequence
AGUCGG*CUGU
Length
10 nucleotides
Bulged bases
6ZMI|1|L5|G|3839
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6ZMI_111 not in the Motif Atlas
Homologous match to IL_8C3A_083
Geometric discrepancy: 0.0691
The information below is about IL_8C3A_083
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_06455.1
Basepair signature
cWW-L-R-L-cWW-L-L
Number of instances in this motif group
7

Unit IDs

6ZMI|1|L5|A|2850
6ZMI|1|L5|G|2851
6ZMI|1|L5|U|2852
6ZMI|1|L5|C|2853
6ZMI|1|L5|G|2854
6ZMI|1|L5|G|2855
*
6ZMI|1|L5|C|3837
6ZMI|1|L5|U|3838
6ZMI|1|L5|G|3839
6ZMI|1|L5|U|3840

Current chains

Chain L5
28S ribosomal RNA

Nearby chains

Chain LB
60S ribosomal protein L3
Chain LV
60S ribosomal protein L23

Coloring options:


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