IL_6ZMI_125

3D structure

PDB id

6ZMI (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human LYAR-80S ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

6ZMI|1|L5|A|3785, 6ZMI|1|L5|C|3791, 6ZMI|1|L5|C|3810

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZMI_125 not in the Motif Atlas

Geometric match to IL_5TBW_090

Geometric discrepancy: 0.0753

The information below is about IL_5TBW_090

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

6ZMI|1|L5|C|3781
6ZMI|1|L5|C|3782
6ZMI|1|L5|A|3783
6ZMI|1|L5|A|3784
6ZMI|1|L5|A|3785
6ZMI|1|L5|U|3786
6ZMI|1|L5|G|3787
6ZMI|1|L5|C|3788
6ZMI|1|L5|C|3789
6ZMI|1|L5|U|3790
6ZMI|1|L5|C|3791
6ZMI|1|L5|G|3792
*
6ZMI|1|L5|C|3808
6ZMI|1|L5|G|3809
6ZMI|1|L5|C|3810
6ZMI|1|L5|G|3811

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain Ln

60S ribosomal protein L41

Chain S2

Small subunit ribosomal RNA; SSU rRNA