IL_6ZMI_158
3D structure
- PDB id
- 6ZMI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2 Nsp1 bound to the human LYAR-80S ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- GAUUAU*AGAAUC
- Length
- 12 nucleotides
- Bulged bases
- 6ZMI|1|L5|A|4708
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZMI_158 not in the Motif Atlas
- Geometric match to IL_5J7L_350
- Geometric discrepancy: 0.2245
- The information below is about IL_5J7L_350
- Detailed Annotation
- UAA/GAN with extra cWW
- Broad Annotation
- No text annotation
- Motif group
- IL_49767.8
- Basepair signature
- cWW-cWW-tWH-L-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
6ZMI|1|L5|G|4680
6ZMI|1|L5|A|4681
6ZMI|1|L5|U|4682
6ZMI|1|L5|U|4683
6ZMI|1|L5|A|4684
6ZMI|1|L5|U|4685
*
6ZMI|1|L5|A|4705
6ZMI|1|L5|G|4706
6ZMI|1|L5|A|4707
6ZMI|1|L5|A|4708
6ZMI|1|L5|U|4709
6ZMI|1|L5|C|4710
Current chains
- Chain L5
- 28S ribosomal RNA
Nearby chains
- Chain LH
- 60S ribosomal protein L9
- Chain LO
- 60S ribosomal protein L13a
- Chain Lm
- Ubiquitin-60S ribosomal protein L40
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