IL_6ZMI_179
3D structure
- PDB id
- 6ZMI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2 Nsp1 bound to the human LYAR-80S ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- GUUAGUAC*GGAAUAC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZMI_179 not in the Motif Atlas
- Homologous match to IL_5TBW_377
- Geometric discrepancy: 0.2992
- The information below is about IL_5TBW_377
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.8
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
6ZMI|1|L7|G|71
6ZMI|1|L7|U|72
6ZMI|1|L7|U|73
6ZMI|1|L7|A|74
6ZMI|1|L7|G|75
6ZMI|1|L7|U|76
6ZMI|1|L7|A|77
6ZMI|1|L7|C|78
*
6ZMI|1|L7|G|98
6ZMI|1|L7|G|99
6ZMI|1|L7|A|100
6ZMI|1|L7|A|101
6ZMI|1|L7|U|102
6ZMI|1|L7|A|103
6ZMI|1|L7|C|104
Current chains
- Chain L7
- 5S ribosomal RNA
Nearby chains
- Chain L5
- Large subunit ribosomal RNA; LSU rRNA
- Chain LD
- 60S ribosomal protein L5
- Chain LF
- 60S ribosomal protein L7
- Chain LI
- 60S ribosomal protein L10-like
- Chain LS
- 60S ribosomal protein L18a
Coloring options: