IL_6ZMI_222

3D structure

PDB id

6ZMI (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human LYAR-80S ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GUUAAAA*UC

Length

9 nucleotides

Bulged bases

6ZMI|1|S2|A|668

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZMI_222 not in the Motif Atlas

Geometric match to IL_4LFB_022

Geometric discrepancy: 0.1114

The information below is about IL_4LFB_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.6

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

4

Unit IDs

6ZMI|1|S2|G|665
6ZMI|1|S2|U|666
6ZMI|1|S2|U|667
6ZMI|1|S2|A|668
6ZMI|1|S2|A|669
6ZMI|1|S2|A|670
6ZMI|1|S2|A|671
*
6ZMI|1|S2|U|1161
6ZMI|1|S2|C|1162

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SX

40S ribosomal protein S23

Chain Sa

40S ribosomal protein S26