3D structure

PDB id
6ZMI (explore in PDB, NAKB, or RNA 3D Hub)
Description
SARS-CoV-2 Nsp1 bound to the human LYAR-80S ribosome complex
Experimental method
ELECTRON MICROSCOPY
Resolution
2.6 Å

Loop

Sequence
CGA*UCUUUGG
Length
10 nucleotides
Bulged bases
6ZMI|1|S2|C|1153, 6ZMI|1|S2|U|1155, 6ZMI|1|S2|G|1157
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6ZMI_238 not in the Motif Atlas
Homologous match to IL_4V88_437
Geometric discrepancy: 0.0835
The information below is about IL_4V88_437
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_62898.1
Basepair signature
cWW-L-R-L-cWW
Number of instances in this motif group
2

Unit IDs

6ZMI|1|S2|C|1091
6ZMI|1|S2|G|1092
6ZMI|1|S2|A|1093
*
6ZMI|1|S2|U|1152
6ZMI|1|S2|C|1153
6ZMI|1|S2|U|1154
6ZMI|1|S2|U|1155
6ZMI|1|S2|U|1156
6ZMI|1|S2|G|1157
6ZMI|1|S2|G|1158

Current chains

Chain S2
18S ribosomal RNA

Nearby chains

Chain SC
40S ribosomal protein S2
Chain SL
40S ribosomal protein S11
Chain SN
40S ribosomal protein S13
Chain SW
40S ribosomal protein S15a
Chain SX
40S ribosomal protein S23
Chain Sb
40S ribosomal protein S27

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