IL_6ZMI_258
3D structure
- PDB id
- 6ZMI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2 Nsp1 bound to the human LYAR-80S ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- CAUGC*GAGG
- Length
- 9 nucleotides
- Bulged bases
- 6ZMI|1|S2|U|1397
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZMI_258 not in the Motif Atlas
- Geometric match to IL_6JDV_002
- Geometric discrepancy: 0.3219
- The information below is about IL_6JDV_002
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_85033.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 35
Unit IDs
6ZMI|1|S2|C|1395
6ZMI|1|S2|A|1396
6ZMI|1|S2|U|1397
6ZMI|1|S2|G|1398
6ZMI|1|S2|C|1399
*
6ZMI|1|S2|G|1447
6ZMI|1|S2|A|1448
6ZMI|1|S2|G|1449
6ZMI|1|S2|G|1450
Current chains
- Chain S2
- 18S ribosomal RNA
Nearby chains
- Chain SQ
- 40S ribosomal protein S16
- Chain SR
- 40S ribosomal protein S17
- Chain SU
- 40S ribosomal protein S20
- Chain Sg
- Receptor of activated protein C kinase 1
Coloring options: