IL_6ZMI_276
3D structure
- PDB id
- 6ZMI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2 Nsp1 bound to the human LYAR-80S ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- CGGAU*AGAAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZMI_276 not in the Motif Atlas
- Homologous match to IL_4V88_474
- Geometric discrepancy: 0.1903
- The information below is about IL_4V88_474
- Detailed Annotation
- Triple sheared
- Broad Annotation
- No text annotation
- Motif group
- IL_95716.2
- Basepair signature
- cWW-cWW-tHS-tHS-tSH-cWW
- Number of instances in this motif group
- 18
Unit IDs
6ZMI|1|S2|C|1742
6ZMI|1|S2|G|1743
6ZMI|1|S2|G|1744
6ZMI|1|S2|A|1745
6ZMI|1|S2|U|1746
*
6ZMI|1|S2|A|1788
6ZMI|1|S2|G|1789
6ZMI|1|S2|A|1790
6ZMI|1|S2|A|1791
6ZMI|1|S2|G|1792
Current chains
- Chain S2
- 18S ribosomal RNA
Nearby chains
- Chain LW
- 60S ribosomal protein L24
- Chain SG
- 40S ribosomal protein S6
- Chain SI
- 40S ribosomal protein S8
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