IL_6ZMI_280
3D structure
- PDB id
- 6ZMI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2 Nsp1 bound to the human LYAR-80S ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- GGCCCGG*UCC
- Length
- 10 nucleotides
- Bulged bases
- 6ZMI|1|L5|C|501, 6ZMI|1|L5|C|502, 6ZMI|1|L5|C|503, 6ZMI|1|L5|G|504
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZMI_280 not in the Motif Atlas
- Geometric match to IL_3TD0_005
- Geometric discrepancy: 0.2437
- The information below is about IL_3TD0_005
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- Isolated non-canonical cWW pair
- Motif group
- IL_57744.1
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 22
Unit IDs
6ZMI|1|L5|G|499
6ZMI|1|L5|G|500
6ZMI|1|L5|C|501
6ZMI|1|L5|C|502
6ZMI|1|L5|C|503
6ZMI|1|L5|G|504
6ZMI|1|L5|G|505
*
6ZMI|1|L5|U|653
6ZMI|1|L5|C|654
6ZMI|1|L5|C|655
Current chains
- Chain L5
- 28S ribosomal RNA
Nearby chains
- Chain LC
- 60S ribosomal protein L4
- Chain LQ
- 60S ribosomal protein L18
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