IL_6ZMO_053

3D structure

PDB id

6ZMO (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human LYAR-80S-eEF1a ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAG*CGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZMO_053 not in the Motif Atlas

Geometric match to IL_3D0U_002

Geometric discrepancy: 0.1349

The information below is about IL_3D0U_002

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.2

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

43

Unit IDs

6ZMO|1|L5|C|1431
6ZMO|1|L5|G|1432
6ZMO|1|L5|A|1433
6ZMO|1|L5|G|1434
*
6ZMO|1|L5|C|1450
6ZMO|1|L5|G|1451
6ZMO|1|L5|A|1452
6ZMO|1|L5|G|1453

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LQ

60S ribosomal protein L18