IL_6ZMO_067

3D structure

PDB id

6ZMO (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human LYAR-80S-eEF1a ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUCGCAGACCCGACGCCCGCCACG*CG

Length

26 nucleotides

Bulged bases

6ZMO|1|L5|C|1707, 6ZMO|1|L5|G|1708

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZMO|1|L5|C|1694
6ZMO|1|L5|U|1695
6ZMO|1|L5|C|1696
6ZMO|1|L5|G|1697
6ZMO|1|L5|C|1698
6ZMO|1|L5|A|1699
6ZMO|1|L5|G|1700
6ZMO|1|L5|A|1701
6ZMO|1|L5|C|1702
6ZMO|1|L5|C|1703
6ZMO|1|L5|C|1704
6ZMO|1|L5|G|1705
6ZMO|1|L5|A|1706
6ZMO|1|L5|C|1707
6ZMO|1|L5|G|1708
6ZMO|1|L5|C|1709
6ZMO|1|L5|C|1714
6ZMO|1|L5|C|1715
6ZMO|1|L5|G|1716
6ZMO|1|L5|C|1717
6ZMO|1|L5|C|1718
6ZMO|1|L5|A|1719
6ZMO|1|L5|C|1720
6ZMO|1|L5|G|1721
*
6ZMO|1|L5|C|1841
6ZMO|1|L5|G|1842

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LF

60S ribosomal protein L7

Chain LQ

60S ribosomal protein L18

Chain LT

60S ribosomal protein L21

Chain Lb

60S ribosomal protein L29