IL_6ZMO_112

3D structure

PDB id

6ZMO (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human LYAR-80S-eEF1a ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

6ZMO|1|L5|U|2880

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZMO_112 not in the Motif Atlas

Geometric match to IL_4V9F_063

Geometric discrepancy: 0.0804

The information below is about IL_4V9F_063

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_20700.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

10

Unit IDs

6ZMO|1|L5|C|2867
6ZMO|1|L5|G|2868
6ZMO|1|L5|U|2869
6ZMO|1|L5|A|2870
6ZMO|1|L5|A|2871
6ZMO|1|L5|C|2872
*
6ZMO|1|L5|G|2877
6ZMO|1|L5|G|2878
6ZMO|1|L5|A|2879
6ZMO|1|L5|U|2880
6ZMO|1|L5|A|2881
6ZMO|1|L5|A|2882
6ZMO|1|L5|G|2883

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain Ln

60S ribosomal protein L41

Chain Lp

60S ribosomal protein L37a

Chain S2

Small subunit ribosomal RNA; SSU rRNA