IL_6ZMO_258

3D structure

PDB id

6ZMO (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human LYAR-80S-eEF1a ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

ACUA*UUCU

Length

8 nucleotides

Bulged bases

6ZMO|1|S2|C|1403, 6ZMO|1|S2|U|1404

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZMO_258 not in the Motif Atlas

Homologous match to IL_4V88_456

Geometric discrepancy: 0.1252

The information below is about IL_4V88_456

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_76458.1

Basepair signature

cWW-cSH-L-cWW

Number of instances in this motif group

2

Unit IDs

6ZMO|1|S2|A|1402
6ZMO|1|S2|C|1403
6ZMO|1|S2|U|1404
6ZMO|1|S2|A|1405
*
6ZMO|1|S2|U|1441
6ZMO|1|S2|U|1442
6ZMO|1|S2|C|1443
6ZMO|1|S2|U|1444

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SQ

40S ribosomal protein S16

Chain SU

40S ribosomal protein S20