IL_6ZMO_265

3D structure

PDB id

6ZMO (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human LYAR-80S-eEF1a ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

6ZMO|1|S2|C|1701, 6ZMO|1|S2|A|1835

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZMO_265 not in the Motif Atlas

Geometric match to IL_5J7L_058

Geometric discrepancy: 0.0993

The information below is about IL_5J7L_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

6ZMO|1|S2|C|1700
6ZMO|1|S2|C|1701
6ZMO|1|S2|G|1702
*
6ZMO|1|S2|C|1833
6ZMO|1|S2|A|1834
6ZMO|1|S2|A|1835
6ZMO|1|S2|G|1836

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain CE

Cell growth-regulating nucleolar protein

Chain Sa

40S ribosomal protein S26