IL_6ZMO_266

3D structure

PDB id

6ZMO (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human LYAR-80S-eEF1a ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCCC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZMO_266 not in the Motif Atlas

Homologous match to IL_4V88_464

Geometric discrepancy: 0.0865

The information below is about IL_4V88_464

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.1

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

6ZMO|1|S2|G|1702
6ZMO|1|S2|C|1703
6ZMO|1|S2|C|1704
6ZMO|1|S2|C|1705
*
6ZMO|1|S2|G|1829
6ZMO|1|S2|U|1830
6ZMO|1|S2|A|1831
6ZMO|1|S2|A|1832
6ZMO|1|S2|C|1833

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain CE

Cell growth-regulating nucleolar protein

Chain L5

Large subunit ribosomal RNA; LSU rRNA

Chain Ln

60S ribosomal protein L41