IL_6ZMO_268
3D structure
- PDB id
- 6ZMO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2 Nsp1 bound to the human LYAR-80S-eEF1a ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGCU*AAAAG
- Length
- 9 nucleotides
- Bulged bases
- 6ZMO|1|S2|A|1825
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZMO_268 not in the Motif Atlas
- Geometric match to IL_1D4R_001
- Geometric discrepancy: 0.2529
- The information below is about IL_1D4R_001
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 39
Unit IDs
6ZMO|1|S2|C|1708
6ZMO|1|S2|G|1709
6ZMO|1|S2|C|1710
6ZMO|1|S2|U|1711
*
6ZMO|1|S2|A|1822
6ZMO|1|S2|A|1823
6ZMO|1|S2|A|1824
6ZMO|1|S2|A|1825
6ZMO|1|S2|G|1826
Current chains
- Chain S2
- 18S ribosomal RNA
Nearby chains
- Chain CB
- Transfer RNA; tRNA
- Chain CE
- Cell growth-regulating nucleolar protein
- Chain L5
- Large subunit ribosomal RNA; LSU rRNA
- Chain Ln
- 60S ribosomal protein L41
- Chain SX
- 40S ribosomal protein S23
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