IL_6ZMO_285

3D structure

PDB id

6ZMO (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human LYAR-80S-eEF1a ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAUUG*CCAAGCG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZMO|1|L5|C|4466
6ZMO|1|L5|A|4467
6ZMO|1|L5|U|4468
6ZMO|1|L5|U|4469
6ZMO|1|L5|G|4470
*
6ZMO|1|L5|C|4485
6ZMO|1|L5|C|4486
6ZMO|1|L5|A|4487
6ZMO|1|L5|A|4488
6ZMO|1|L5|G|4489
6ZMO|1|L5|C|4490
6ZMO|1|L5|G|4491

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LH

60S ribosomal protein L9

Chain LO

60S ribosomal protein L13a

Chain LV

60S ribosomal protein L23

Chain Lm

Ubiquitin-60S ribosomal protein L40