IL_6ZMT_014

3D structure

PDB id

6ZMT (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to a pre-40S-like ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

6ZMT|1|2|U|172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZMT_014 not in the Motif Atlas

Homologous match to IL_4V88_394

Geometric discrepancy: 0.1118

The information below is about IL_4V88_394

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.3

Basepair signature

cWW-cWW-tWH-tWH-tHW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

6ZMT|1|2|G|145
6ZMT|1|2|G|146
6ZMT|1|2|A|147
6ZMT|1|2|U|148
6ZMT|1|2|A|149
6ZMT|1|2|A|150
6ZMT|1|2|C|151
*
6ZMT|1|2|G|167
6ZMT|1|2|C|168
6ZMT|1|2|U|169
6ZMT|1|2|A|170
6ZMT|1|2|A|171
6ZMT|1|2|U|172
6ZMT|1|2|A|173
6ZMT|1|2|C|174

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain G

40S ribosomal protein S6

Chain Y

40S ribosomal protein S24