IL_6ZMT_051

3D structure

PDB id

6ZMT (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to a pre-40S-like ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GCUAG*CUUGGACC

Length

13 nucleotides

Bulged bases

6ZMT|1|2|G|970

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZMT_051 not in the Motif Atlas

Homologous match to IL_4V88_434

Geometric discrepancy: 0.1575

The information below is about IL_4V88_434

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_45067.5

Basepair signature

cWW-tSH-tSS-tHS-R-cWW-cWW-R

Number of instances in this motif group

16

Unit IDs

6ZMT|1|2|G|952
6ZMT|1|2|C|953
6ZMT|1|2|U|954
6ZMT|1|2|A|955
6ZMT|1|2|G|956
*
6ZMT|1|2|C|967
6ZMT|1|2|U|968
6ZMT|1|2|U|969
6ZMT|1|2|G|970
6ZMT|1|2|G|971
6ZMT|1|2|A|972
6ZMT|1|2|C|973
6ZMT|1|2|C|974

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C

40S ribosomal protein S3a

Chain P

40S ribosomal protein S14