IL_6ZMT_057

3D structure

PDB id

6ZMT (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to a pre-40S-like ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAC*GUAC

Length

7 nucleotides

Bulged bases

6ZMT|1|2|A|1695

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZMT_057 not in the Motif Atlas

Geometric match to IL_7A0S_078

Geometric discrepancy: 0.2948

The information below is about IL_7A0S_078

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_71625.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

65

Unit IDs

6ZMT|1|2|G|1203
6ZMT|1|2|A|1204
6ZMT|1|2|C|1205
*
6ZMT|1|2|G|1693
6ZMT|1|2|U|1694
6ZMT|1|2|A|1695
6ZMT|1|2|C|1696

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain D

40S ribosomal protein S2