IL_6ZMT_073

3D structure

PDB id

6ZMT (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to a pre-40S-like ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

ACUA*UUCU

Length

8 nucleotides

Bulged bases

6ZMT|1|2|C|1403, 6ZMT|1|2|U|1404

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZMT_073 not in the Motif Atlas

Homologous match to IL_4V88_456

Geometric discrepancy: 0.1666

The information below is about IL_4V88_456

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_76458.1

Basepair signature

cWW-cSH-L-cWW

Number of instances in this motif group

2

Unit IDs

6ZMT|1|2|A|1402
6ZMT|1|2|C|1403
6ZMT|1|2|U|1404
6ZMT|1|2|A|1405
*
6ZMT|1|2|U|1441
6ZMT|1|2|U|1442
6ZMT|1|2|C|1443
6ZMT|1|2|U|1444

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain R

40S ribosomal protein S16

Chain V

40S ribosomal protein S20

Chain j

Receptor of activated protein C kinase 1