IL_6ZMT_080
3D structure
- PDB id
- 6ZMT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2 Nsp1 bound to a pre-40S-like ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CGAU*AGAG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZMT_080 not in the Motif Atlas
- Homologous match to IL_4V88_468
- Geometric discrepancy: 0.3732
- The information below is about IL_4V88_468
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_09705.12
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 35
Unit IDs
6ZMT|1|2|C|1717
6ZMT|1|2|G|1718
6ZMT|1|2|A|1719
6ZMT|1|2|U|1720
*
6ZMT|1|2|A|1813
6ZMT|1|2|G|1814
6ZMT|1|2|A|1815
6ZMT|1|2|G|1816
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain u
- Pre-rRNA-processing protein TSR1 homolog
Coloring options: