IL_6ZMW_076

3D structure

PDB id

6ZMW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a human 48S translational initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UA*UCCCCCA

Length

9 nucleotides

Bulged bases

6ZMW|1|A|C|1433, 6ZMW|1|A|C|1434, 6ZMW|1|A|C|1435

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZMW_076 not in the Motif Atlas

Geometric match to IL_1R3E_001

Geometric discrepancy: 0.1757

The information below is about IL_1R3E_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_05670.1

Basepair signature

cWW-cWW

Number of instances in this motif group

9

Unit IDs

6ZMW|1|A|U|1408
6ZMW|1|A|A|1409
*
6ZMW|1|A|U|1432
6ZMW|1|A|C|1433
6ZMW|1|A|C|1434
6ZMW|1|A|C|1435
6ZMW|1|A|C|1436
6ZMW|1|A|C|1437
6ZMW|1|A|A|1438

Current chains

Chain A

18S rRNA

Nearby chains

Chain Y

40S ribosomal protein S16

Chain h

40S ribosomal protein S20