3D structure

PDB id
6ZMW (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a human 48S translational initiation complex
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
UAUGGU*AACG
Length
10 nucleotides
Bulged bases
6ZMW|1|A|G|113
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6ZMW_093 not in the Motif Atlas
Homologous match to IL_8P9A_380
Geometric discrepancy: 0.526
The information below is about IL_8P9A_380
Detailed Annotation
Tandem non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_71194.1
Basepair signature
cWW-cWW-cWW-cWW
Number of instances in this motif group
29

Unit IDs

6ZMW|1|A|U|110
6ZMW|1|A|A|111
6ZMW|1|A|U|112
6ZMW|1|A|G|113
6ZMW|1|A|G|114
6ZMW|1|A|U|115
*
6ZMW|1|A|A|348
6ZMW|1|A|A|349
6ZMW|1|A|C|350
6ZMW|1|A|G|351

Current chains

Chain A
18S rRNA

Nearby chains

Chain B
40S ribosomal protein S11
Chain C
40S ribosomal protein S4, X isoform
Chain R
40S ribosomal protein S8

Coloring options:


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