IL_6ZN5_013

3D structure

PDB id

6ZN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to a pre-40S-like ribosome complex - state 2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUACUU*AUGCCGAC

Length

14 nucleotides

Bulged bases

6ZN5|1|2|C|142, 6ZN5|1|2|U|143

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZN5|1|2|G|130
6ZN5|1|2|U|140
6ZN5|1|2|A|141
6ZN5|1|2|C|142
6ZN5|1|2|U|143
6ZN5|1|2|U|144
*
6ZN5|1|2|A|175
6ZN5|1|2|U|176
6ZN5|1|2|G|177
6ZN5|1|2|C|178
6ZN5|1|2|C|179
6ZN5|1|2|G|180
6ZN5|1|2|A|181
6ZN5|1|2|C|182

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain G

40S ribosomal protein S6