IL_6ZN5_022

3D structure

PDB id

6ZN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to a pre-40S-like ribosome complex - state 2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUUCGA*UG

Length

8 nucleotides

Bulged bases

6ZN5|1|2|U|368, 6ZN5|1|2|C|369

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZN5_022 not in the Motif Atlas

Geometric match to IL_5Y58_001

Geometric discrepancy: 0.3221

The information below is about IL_5Y58_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_59877.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

6ZN5|1|2|U|366
6ZN5|1|2|U|367
6ZN5|1|2|U|368
6ZN5|1|2|C|369
6ZN5|1|2|G|370
6ZN5|1|2|A|371
*
6ZN5|1|2|U|393
6ZN5|1|2|G|394

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain I

40S ribosomal protein S8

Chain L

40S ribosomal protein S11