IL_6ZN5_031

3D structure

PDB id

6ZN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to a pre-40S-like ribosome complex - state 2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAG*CGAGGAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZN5_031 not in the Motif Atlas

Homologous match to IL_8C3A_420

Geometric discrepancy: 0.2009

The information below is about IL_8C3A_420

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_14882.1

Basepair signature

cWW-tSH-L-cWW-L-L-R-L

Number of instances in this motif group

1

Unit IDs

6ZN5|1|2|G|563
6ZN5|1|2|A|564
6ZN5|1|2|G|565
*
6ZN5|1|2|C|585
6ZN5|1|2|G|586
6ZN5|1|2|A|587
6ZN5|1|2|G|588
6ZN5|1|2|G|589
6ZN5|1|2|A|590
6ZN5|1|2|U|591
6ZN5|1|2|C|592

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain J

40S ribosomal protein S9

Chain e

40S ribosomal protein S30

Chain u

Pre-rRNA-processing protein TSR1 homolog