IL_6ZN5_063

3D structure

PDB id

6ZN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to a pre-40S-like ribosome complex - state 2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZN5_063 not in the Motif Atlas

Homologous match to IL_4V88_445

Geometric discrepancy: 0.2459

The information below is about IL_4V88_445

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_18604.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

46

Unit IDs

6ZN5|1|2|G|1235
6ZN5|1|2|G|1236
*
6ZN5|1|2|C|1521
6ZN5|1|2|A|1522
6ZN5|1|2|C|1523

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain Q

40S ribosomal protein S15

Chain T

40S ribosomal protein S18

Chain u

Pre-rRNA-processing protein TSR1 homolog