IL_6ZN5_085

3D structure

PDB id

6ZN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to a pre-40S-like ribosome complex - state 2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UACCGAUUGG*CUAGAGGAA

Length

19 nucleotides

Bulged bases

6ZN5|1|2|U|1721

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZN5|1|2|U|1714
6ZN5|1|2|A|1715
6ZN5|1|2|C|1716
6ZN5|1|2|C|1717
6ZN5|1|2|G|1718
6ZN5|1|2|A|1719
6ZN5|1|2|U|1720
6ZN5|1|2|U|1721
6ZN5|1|2|G|1722
6ZN5|1|2|G|1723
*
6ZN5|1|2|C|1811
6ZN5|1|2|U|1812
6ZN5|1|2|A|1813
6ZN5|1|2|G|1814
6ZN5|1|2|A|1815
6ZN5|1|2|G|1816
6ZN5|1|2|G|1817
6ZN5|1|2|A|1818
6ZN5|1|2|A|1819

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain X

40S ribosomal protein S23

Chain u

Pre-rRNA-processing protein TSR1 homolog