IL_6ZN5_093

3D structure

PDB id

6ZN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to a pre-40S-like ribosome complex - state 2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GA*UUU

Length

5 nucleotides

Bulged bases

6ZN5|1|2|U|1016

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZN5_093 not in the Motif Atlas

Geometric match to IL_3NDB_005

Geometric discrepancy: 0.3126

The information below is about IL_3NDB_005

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

6ZN5|1|2|G|925
6ZN5|1|2|A|926
*
6ZN5|1|2|U|1015
6ZN5|1|2|U|1016
6ZN5|1|2|U|1017

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain N

40S ribosomal protein S13

Chain b

40S ribosomal protein S27