IL_6ZN5_094

3D structure

PDB id

6ZN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to a pre-40S-like ribosome complex - state 2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

ACAGGAUUG*CUCGAUU

Length

16 nucleotides

Bulged bases

6ZN5|1|2|G|1285

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZN5|1|2|A|1282
6ZN5|1|2|C|1283
6ZN5|1|2|A|1284
6ZN5|1|2|G|1285
6ZN5|1|2|G|1286
6ZN5|1|2|A|1287
6ZN5|1|2|U|1288
6ZN5|1|2|U|1289
6ZN5|1|2|G|1290
*
6ZN5|1|2|C|1309
6ZN5|1|2|U|1310
6ZN5|1|2|C|1311
6ZN5|1|2|G|1312
6ZN5|1|2|A|1313
6ZN5|1|2|U|1314
6ZN5|1|2|U|1315

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain M

40S ribosomal protein S10

Chain O

40S ribosomal protein S12

Chain f

40S ribosomal protein S29

Chain g

Ribosomal protein S27a